module_coords.Rdcreates a data set named coords that describes the association to be considered between variables of a module to be simulated, and details to map such information into a matrix.
number of the variables in the module to be simulated
string with coordinates of the variables which are negativelly correlated.
Distances describing negative assocaitions known a priori
Coordinates that describe the positive association between two variables ex 1_2 indicates association between first and second variable
Distances describing positive assocaitions known a priori
Coordinates that describe the positive association between two variables ex 1_2 indicates association between first and second variable
parameter like in the sample function used to generate randomly unknown positive and negative associations
a list with an coords a data set named coords that describes the association to be considered between variables of a module to be simulated, and details to map such information into a matrix.
module_coords(n_var=9,which_neg=c("2_1","6_2","1_9","1_6","2_3"),
dis_neg_know_ass=c(-0.9300003, -0.9310004, -0.8684074),
coo_known_neg_ass=c("2_1","6_2","1_9"),
dis_pos_know_ass=c(0.5235988, 0.6435011, 1.1197695),
coo_known_pos_ass=c("3_9","4_5","6_8"),by=0.001)
#> $coords
#> i j pos_neg coord_ij distance lower diag upper
#> 1 1 1 pos 1_1 1.5707960 non_low_tri diag non_uper_tri
#> 2 2 1 neg 2_1 -0.9300003 low_tri non_diag non_uper_tri
#> 3 3 1 pos 3_1 0.6840000 low_tri non_diag non_uper_tri
#> 4 4 1 pos 4_1 0.3760000 low_tri non_diag non_uper_tri
#> 5 5 1 pos 5_1 1.4550000 low_tri non_diag non_uper_tri
#> 6 6 1 neg 6_1 3.6025927 low_tri non_diag non_uper_tri
#> 7 7 1 pos 7_1 1.1500000 low_tri non_diag non_uper_tri
#> 8 8 1 pos 8_1 0.0900000 low_tri non_diag non_uper_tri
#> 9 9 1 neg 9_1 -0.8684074 low_tri non_diag non_uper_tri
#> 10 1 2 neg 1_2 -0.9300003 non_low_tri non_diag uper_tri
#> 11 2 2 pos 2_2 1.5707960 non_low_tri diag non_uper_tri
#> 12 3 2 neg 3_2 3.2975927 low_tri non_diag non_uper_tri
#> 13 4 2 pos 4_2 0.6330000 low_tri non_diag non_uper_tri
#> 14 5 2 pos 5_2 1.4220000 low_tri non_diag non_uper_tri
#> 15 6 2 neg 6_2 -0.9310004 low_tri non_diag non_uper_tri
#> 16 7 2 pos 7_2 1.3310000 low_tri non_diag non_uper_tri
#> 17 8 2 pos 8_2 1.2840000 low_tri non_diag non_uper_tri
#> 18 9 2 pos 9_2 1.2230000 low_tri non_diag non_uper_tri
#> 19 1 3 pos 1_3 0.6840000 non_low_tri non_diag uper_tri
#> 20 2 3 neg 2_3 3.2975927 non_low_tri non_diag uper_tri
#> 21 3 3 pos 3_3 1.5707960 non_low_tri diag non_uper_tri
#> 22 4 3 pos 4_3 1.0980000 low_tri non_diag non_uper_tri
#> 23 5 3 pos 5_3 0.2220000 low_tri non_diag non_uper_tri
#> 24 6 3 pos 6_3 0.3910000 low_tri non_diag non_uper_tri
#> 25 7 3 pos 7_3 0.6470000 low_tri non_diag non_uper_tri
#> 26 8 3 pos 8_3 0.7890000 low_tri non_diag non_uper_tri
#> 27 9 3 pos 9_3 0.5235988 low_tri non_diag non_uper_tri
#> 28 1 4 pos 1_4 0.3760000 non_low_tri non_diag uper_tri
#> 29 2 4 pos 2_4 0.6330000 non_low_tri non_diag uper_tri
#> 30 3 4 pos 3_4 1.0980000 non_low_tri non_diag uper_tri
#> 31 4 4 pos 4_4 1.5707960 non_low_tri diag non_uper_tri
#> 32 5 4 pos 5_4 0.6435011 low_tri non_diag non_uper_tri
#> 33 6 4 pos 6_4 1.3590000 low_tri non_diag non_uper_tri
#> 34 7 4 pos 7_4 1.4840000 low_tri non_diag non_uper_tri
#> 35 8 4 pos 8_4 1.2130000 low_tri non_diag non_uper_tri
#> 36 9 4 pos 9_4 0.2170000 low_tri non_diag non_uper_tri
#> 37 1 5 pos 1_5 1.4550000 non_low_tri non_diag uper_tri
#> 38 2 5 pos 2_5 1.4220000 non_low_tri non_diag uper_tri
#> 39 3 5 pos 3_5 0.2220000 non_low_tri non_diag uper_tri
#> 40 4 5 pos 4_5 0.6435011 non_low_tri non_diag uper_tri
#> 41 5 5 pos 5_5 1.5707960 non_low_tri diag non_uper_tri
#> 42 6 5 pos 6_5 0.5090000 low_tri non_diag non_uper_tri
#> 43 7 5 pos 7_5 1.2020000 low_tri non_diag non_uper_tri
#> 44 8 5 pos 8_5 1.5490000 low_tri non_diag non_uper_tri
#> 45 9 5 pos 9_5 1.4330000 low_tri non_diag non_uper_tri
#> 46 1 6 neg 1_6 3.6025927 non_low_tri non_diag uper_tri
#> 47 2 6 neg 2_6 -0.9310004 non_low_tri non_diag uper_tri
#> 48 3 6 pos 3_6 0.3910000 non_low_tri non_diag uper_tri
#> 49 4 6 pos 4_6 1.3590000 non_low_tri non_diag uper_tri
#> 50 5 6 pos 5_6 0.5090000 non_low_tri non_diag uper_tri
#> 51 6 6 pos 6_6 1.5707960 non_low_tri diag non_uper_tri
#> 52 7 6 pos 7_6 0.6820000 low_tri non_diag non_uper_tri
#> 53 8 6 pos 8_6 1.1197695 low_tri non_diag non_uper_tri
#> 54 9 6 pos 9_6 0.1980000 low_tri non_diag non_uper_tri
#> 55 1 7 pos 1_7 1.1500000 non_low_tri non_diag uper_tri
#> 56 2 7 pos 2_7 1.3310000 non_low_tri non_diag uper_tri
#> 57 3 7 pos 3_7 0.6470000 non_low_tri non_diag uper_tri
#> 58 4 7 pos 4_7 1.4840000 non_low_tri non_diag uper_tri
#> 59 5 7 pos 5_7 1.2020000 non_low_tri non_diag uper_tri
#> 60 6 7 pos 6_7 0.6820000 non_low_tri non_diag uper_tri
#> 61 7 7 pos 7_7 1.5707960 non_low_tri diag non_uper_tri
#> 62 8 7 pos 8_7 0.6270000 low_tri non_diag non_uper_tri
#> 63 9 7 pos 9_7 1.3970000 low_tri non_diag non_uper_tri
#> 64 1 8 pos 1_8 0.0900000 non_low_tri non_diag uper_tri
#> 65 2 8 pos 2_8 1.2840000 non_low_tri non_diag uper_tri
#> 66 3 8 pos 3_8 0.7890000 non_low_tri non_diag uper_tri
#> 67 4 8 pos 4_8 1.2130000 non_low_tri non_diag uper_tri
#> 68 5 8 pos 5_8 1.5490000 non_low_tri non_diag uper_tri
#> 69 6 8 pos 6_8 1.1197695 non_low_tri non_diag uper_tri
#> 70 7 8 pos 7_8 0.6270000 non_low_tri non_diag uper_tri
#> 71 8 8 pos 8_8 1.5707960 non_low_tri diag non_uper_tri
#> 72 9 8 pos 9_8 0.7240000 low_tri non_diag non_uper_tri
#> 73 1 9 neg 1_9 -0.8684074 non_low_tri non_diag uper_tri
#> 74 2 9 pos 2_9 1.2230000 non_low_tri non_diag uper_tri
#> 75 3 9 pos 3_9 0.5235988 non_low_tri non_diag uper_tri
#> 76 4 9 pos 4_9 0.2170000 non_low_tri non_diag uper_tri
#> 77 5 9 pos 5_9 1.4330000 non_low_tri non_diag uper_tri
#> 78 6 9 pos 6_9 0.1980000 non_low_tri non_diag uper_tri
#> 79 7 9 pos 7_9 1.3970000 non_low_tri non_diag uper_tri
#> 80 8 9 pos 8_9 0.7240000 non_low_tri non_diag uper_tri
#> 81 9 9 pos 9_9 1.5707960 non_low_tri diag non_uper_tri
#> known_priori sin
#> 1 not_know 1.00000000
#> 2 known -0.80162012
#> 3 not_know 0.63189828
#> 4 not_know 0.36720285
#> 5 not_know 0.99330309
#> 6 not_know -0.44484394
#> 7 not_know 0.91276394
#> 8 not_know 0.08987855
#> 9 known -0.76330102
#> 10 known -0.80162012
#> 11 not_know 1.00000000
#> 12 not_know -0.15536803
#> 13 not_know 0.59156619
#> 14 not_know 0.98895024
#> 15 known -0.80221761
#> 16 not_know 0.97138637
#> 17 not_know 0.95915505
#> 18 not_know 0.94012607
#> 19 not_know 0.63189828
#> 20 not_know -0.15536803
#> 21 not_know 1.00000000
#> 22 not_know 0.89029839
#> 23 not_know 0.22018098
#> 24 not_know 0.38111313
#> 25 not_know 0.60279543
#> 26 not_know 0.70964907
#> 27 known 0.50000002
#> 28 not_know 0.36720285
#> 29 not_know 0.59156619
#> 30 not_know 0.89029839
#> 31 not_know 1.00000000
#> 32 known 0.59999999
#> 33 not_know 0.97765487
#> 34 not_know 0.99623556
#> 35 not_know 0.93667085
#> 36 not_know 0.21530095
#> 37 not_know 0.99330309
#> 38 not_know 0.98895024
#> 39 not_know 0.22018098
#> 40 known 0.59999999
#> 41 not_know 1.00000000
#> 42 not_know 0.48730426
#> 43 not_know 0.93276194
#> 44 not_know 0.99976247
#> 45 not_know 0.99052110
#> 46 not_know -0.44484394
#> 47 known -0.80221761
#> 48 not_know 0.38111313
#> 49 not_know 0.97765487
#> 50 not_know 0.48730426
#> 51 not_know 1.00000000
#> 52 not_know 0.63034691
#> 53 known 0.89999999
#> 54 not_know 0.19670880
#> 55 not_know 0.91276394
#> 56 not_know 0.97138637
#> 57 not_know 0.60279543
#> 58 not_know 0.99623556
#> 59 not_know 0.93276194
#> 60 not_know 0.63034691
#> 61 not_know 1.00000000
#> 62 not_know 0.58671803
#> 63 not_know 0.98493539
#> 64 not_know 0.08987855
#> 65 not_know 0.95915505
#> 66 not_know 0.70964907
#> 67 not_know 0.93667085
#> 68 not_know 0.99976247
#> 69 known 0.89999999
#> 70 not_know 0.58671803
#> 71 not_know 1.00000000
#> 72 not_know 0.66238661
#> 73 known -0.76330102
#> 74 not_know 0.94012607
#> 75 known 0.50000002
#> 76 not_know 0.21530095
#> 77 not_know 0.99052110
#> 78 not_know 0.19670880
#> 79 not_know 0.98493539
#> 80 not_know 0.66238661
#> 81 not_know 1.00000000
#>
#> $which_negative
#> [1] "2_1" "6_2" "1_9" "1_6" "2_3" "1_2" "2_6" "9_1" "6_1" "3_2"
#>